The agency awarded contracts for land acquisition without going through the required public bidding process. Also, many required documents were missing or submitted late, which is against the rules.

Contractors who were late in finishing their projects were not charged penalties as required by law. This means the government lost money that it should have collected.

The agency signed contracts for housing projects without having enough money set aside. This caused overspending and forced many projects to stop, wasting time and money.

The agency's report on how much money it collects from housing loans is not accurate. In reality, it collects only a small portion of what is owed, which could cause the government to keep funding the projects.

The government's housing program for Typhoon Yolanda victims is behind schedule. Many houses built are still empty because of local government policies and other issues, so the program's goals haven't been achieved.

Problems with how the agency records and tracks its property and equipment made it impossible to verify the accuracy of the reported values.

The agency does not have a proper guide for handling receivables, which caused errors in reporting large amounts of receivables, making them unreliable.

The agency failed to act on most of the audit recommendations from the previous year. Out of 173 recommendations, only 34 were done, while 134 were not done. This shows a serious lack of follow-through on audit findings, with some even leading to disallowance notices.

Billions of pesos in cash advances given to local government units remain unliquidated over many years, and new funds were illegally released to them despite their failure to account for previous money.

Housing assistance funds given to local governments and beneficiaries remain unliquidated and undocumented, totaling over 190 million pesos.

The C5 Northern Link Road Project spent more money than it received, resulting in a massive negative balance and forcing the agency to improperly borrow from its own corporate funds.

The National Housing Agency (NHA) failed to meet the agreed deadlines for relocating families, achieving only 65% of its target five years later, which could lead to higher costs and fewer beneficiaries.