The agency allowed a contractor to start building a 12-storey commercial/office building without the necessary approvals, which is a violation of proper procedures.

Several housing projects for calamity victims were officially suspended but still had construction ongoing, which raises doubts about the accuracy of management reports and whether progress payments were valid. Additionally, some performance bonds were inactive or expired, putting the agency at risk and violating procurement rules.

The government agency failed to properly oversee 12 housing projects, leading to large amounts of money being wasted or not recovered, including payments to contractors for projects that were terminated, unreturned funds from a completed project, and an unaccounted transfer to a local government unit, all of which violated several laws and regulations.

Land titles were not registered under the developers' names as required, and thousands of titles were not transferred to the NHA despite full payment, complicating ownership transfers to beneficiaries. Additionally, housing construction was improperly relocated without paperwork.

Millions in retention money were released to developers without required substitute bonds or warranties, leaving the agency unprotected against potential project defects.

Housing allocation rules were not followed properly, causing thousands of units to be given to high-ranking officers instead of intended low-salaried personnel, with many units left unawarded or unoccupied.

The financial accounting records for properties available for sale do not match the actual physical inventory, showing a massive unaccounted difference of over 202 million pesos.

Land titles for a housing project were not transferred to the National Housing Authority (NHA), which prevents beneficiaries from receiving their individual titles and securing Pag-IBIG housing loans.

The agency did not submit the original contract and required status reports to the designated government oversight offices.

The agency failed to issue a required Notice of Award to the land developer as mandated by the NEDA Joint Venture Agreement guidelines.

A major property development joint venture bypassed mandatory approvals from the Office of the President and NEDA, fell outside NHA's core mandate, and posed financial risks to the government.

Billion-peso government properties and assets were left uninsured with the Government Service Insurance System, exposing the agency to complete financial loss during natural disasters or accidents.